SIMPA (SIMilar Peptide Analysis) is a program for predicting the secondary structure of proteins. 3 states are taken into consideration: alpha helix (H), beta strand (b) and aperiodical structures (C). This program is based on the nearest neighbour notion. It provides a Q3 result of 67%
Jonathan Levin email@example.com
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Levin JM, Pascarella S, Argos P, Garnier J.
Quantification of secondary structure prediction improvement using multiple alignments. (1993)
Protein Eng. 6:849-54.