SimBioNeT is a biological network topology simulator, in which module structures of different type and size are replicated at different level of network organization and interconnected, so to obtain the desired degree distribution, e.g. scale free, and a clustering coefficient constant with the number of nodes in the network, a typical characteristic of biological networks.
- R package
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IEEE/ACM Trans Comput Biol Bioinform. 2012 Mar-Apr;9(2). doi: 10.1109/TCBB.2011.116. Epub 2011 Aug 18.
SimBioNeT: A Simulator of Biological Network Topology.
Di Camillo B, Falda M, Toffolo G, Cobelli C.