Sep 182015
 

SIM 0.9.4.9

:: DESCRIPTION

SIM (Spectrum Identification Machine) is a Peptide Spectrum Match – PSM search tool that capitalizes on the high intensity b1 fragment ion of tandem mass spectra of peptides coupled in solution with Phenylisotiocyanate – PITC to confidently sequence the first amino acid and ultimately reduce the search space. This tool enables to make a search with sample without PITC labeling too.

::DEVELOPER

Laboratory for Proteomics and Protein Engineering

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows
  • .NET Framework 4.5

:: DOWNLOAD

 SIM

:: MORE INFORMATION

Citation

Bioinformatics. 2013 May 15;29(10):1343-4. doi: 10.1093/bioinformatics/btt106. Epub 2013 Feb 27.
Effectively addressing complex proteomic search spaces with peptide spectrum matching.
Borges D1, Perez-Riverol Y, Nogueira FC, Domont GB, Noda J, da Veiga Leprevost F, Besada V, Fran?a FM, Barbosa VC, Sánchez A, Carvalho PC.

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