Jan 022013
 

shustring 2.6

:: DESCRIPTION

shustring takes one or more sequences as input and returns the corresponding shustrings. The input data need to be in FASTA format, i.e. for each input sequence a definition line followed by the string(s) of residues. Input sequences can be over any alphabet.

::DEVELOPER

Bernhard Haubold

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX
  • C Compiler

:: DOWNLOAD

  shustring

:: MORE INFORMATION

Citation

Bernhard Haubold, Nora Pierstorff, Friedrich Möller and Thomas Wiehe
Genome comparison without alignment using shortest unique substrings
BMC Bioinformatics 2005, 6:123

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