SHORTY 2.0 – de novo Assembler

SHORTY 2.0

:: DESCRIPTION

SHORTY is targetted for de novo assembly of microreads with mate pair information and sequencing errors. SHORTY has some novel approach and features in addressing the short read assembly problem.

::DEVELOPER

Steven Skiena

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • C++ Compiler

:: DOWNLOAD

 SHORTY

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S16.
Crystallizing short-read assemblies around seeds.
Hossain MS, Azimi N, Skiena S.

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