SHORTY is targetted for de novo assembly of microreads with mate pair information and sequencing errors. SHORTY has some novel approach and features in addressing the short read assembly problem.
- Windows / Linux / MacOsX
- C++ Compiler
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BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S16.
Crystallizing short-read assemblies around seeds.
Hossain MS, Azimi N, Skiena S.