Mar 272014
 

ShortCAKE

:: DESCRIPTION

ShortCAKE is a software for generating a shortest sequence that for each DNA k-mer includes the k-mer or its reverse complement. In other words, it generates a shortest possible double-stranded sequence covering all k-mers.

::DEVELOPER

Yaron Orenstein in Ron Shamir‘s Computational Genomics group at Tel Aviv University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  ShortCAKE

:: MORE INFORMATION

Citation

Design of Shortest Double-Stranded DNA Sequences Covering All K-mers with Applications to Protein Binding Microarrays and Synthetic Enhancers,
Yaron Orenstein, Ron Shamir.
Vol. 29 (13), Pages i71-i79, Bioinformatics (2013).doi: 10.1093/bioinformatics/btt230

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