SHARCGS is a DNA assembly program designed for de novo assembly of 25-40mer input fragments and deep sequence coverage. Large numbers of such short reads are generated on advanced sequencing instruments.
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Genome Res. 2007 Nov;17(11):1697-706. Epub 2007 Oct 1.
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
Dohm JC, Lottaz C, Borodina T, Himmelbauer H.