SGNS2 is an extension of SGNS, the stochastic simulator of SGNSim. It uses and expands upon the Next Reaction Method to include dynamic compartments, multi-delayed reactions, and several stochastic molecules partitioning schemes which can be applied on a per-molecule-type basis during cell division.
Andre S. Ribeiro and Jason Lloyd-Price
- Windows / Linux/ MacOsX
- C++ Compiler
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J. Lloyd-Price, A. Gupta, and A. S. Ribeiro (2012)
SGNS2: A Compartmentalized Stochastic Chemical Kinetics Simulator for Dynamic Cell Populations.
Bioinformatics, 28(22):3004-5, doi: 10.1093/bioinformatics/bts556.