Jul 172013
 

Serial NetEvolve 1.0

:: DESCRIPTION

Serial NetEvolve is a modification of the Treevolve program in which serially sampled sequences are evolved along a randomly generated coalescent tree or network (Grassly et al. 1999; Hudson 1983; Kingman 1982) . Treevolve offers a variety of evolutionary model and population parameters including a rate of recombination and as such it was chosen over other programs to be adapted for the simulation of serially sampled data. The new features include the choice of either a clock-like model of evolution or a variable rate of evolution, simulation of serial samples and the output of the randomly generated tree or network in Newick format or in our newly formulated NeTwick format.

::DEVELOPER

Bioinformatics Research Group (BioRG)

:: SCREENSHOTS

SerialNetEvolve

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • C Compiler

:: DOWNLOAD

 Serial NetEvolve

:: MORE INFORMATION

Citation:

Bioinformatics. 2006 Sep 15;22(18):2313-4. Epub 2006 Jul 14.
Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.
Buendia P, Narasimhan G.

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