Dec 162012
 

SeqWord 1.2.1

:: DESCRIPTION

OligoWords calculates the various oligonucleotide usage statistical parameters seen in the Genome Browser.

SeqWord Viewer is a software to download to analyse your own genomes locally (with data from OligoWords). Results are displayed in a browser window.

SeqWord Sniffer was developed to do an automatic search in genomic DNA sequences for loci enriched with the horizontally transferred elements, fitness genes, giant genes, genes for ribosomal RNA and proteins.

::DEVELOPER

Dr. Oleg Reva

:: SCREENSHOTS

SeqWord

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Java
  • Python

:: DOWNLOAD

 SeqWord 

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2008 Aug 7;9:333. doi: 10.1186/1471-2105-9-333.
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage.
Ganesan H, Rakitianskaia AS, Davenport CF, Tümmler B, Reva ON.

209 views

Sorry, the comment form is closed at this time.