seqjoin is used to predict the complete cDNA insert sequence of partially sequenced cDNA clones. The clones’ partial experimental sequence are matched to a database of complete cDNA sequence. If a match is found, the clone’s insert sequence is predicted from the vector sequence, the sequence of the database cDNA sequence entry that was matched and the experimental, partial clone sequence. seqjoin is based on the output of the sequence analysis programs phred, phrap, cross_match and also uses the Emboss package.
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