Sep 082012
 

SeqAlto 0.5-r123

:: DESCRIPTION

 SeqAlto is an aligner specifically designed for Illumina reads of length greater or equal to about 100-bp. It takes advantage of this longer read length to provide fast alignment rates and accurate placement of polymorphic reads. Paired-end reads are recommended for even greater accuracy. When aligning 100-bp paired-end reads SeqAlto is on average about 2-4x faster than BWA while being more sensitive and much faster for longer reads.

::DEVELOPER

Wong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • MacOsX/  Linux

:: DOWNLOAD

 SeqAlto

:: MORE INFORMATION

Citation

John C. Mu, Hui Jiang, Amirhossein Kiani, Marghoob Mohiyuddin, Narges Bani Asadi and Wing H. Wong,
Fast and Accurate Read Alignment for Resequencing,
Bioinformatics (2012) 28 (18): 2366-2373.

357 views

Sorry, the comment form is closed at this time.