SEED is a program for docking libraries of fragments with solvation energy evaluation.The docking approach implemented in the program SEED determines optimal positions and orientations of small-to-medium-sized molecular fragments in the binding site of a rigid protein (hereafter also referred to as receptor) and ranks them according to their binding energy.
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Majeux N, Scarsi M, Caflisch A
Efficient electrostatic solvation model for protein-fragment docking.
Proteins: Struct. Funct. Genet 42, 256-268, 2001