SCPS is an efficient, user-friendly, scalable and multi-platform implementation of a spectral clustering method for clustering homologous proteins. SCPS also implements connected component analysis and hierarchical clustering, integrates TribeMCL and interfaces with external tools such as Cytoscape and NCBI BLAST.
- Windows/ Linux / MacOsX
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BMC Bioinformatics. 2010 Mar 9;11:120. doi: 10.1186/1471-2105-11-120.
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale.
Nepusz T1, Sasidharan R, Paccanaro A.