Schnitzcells is a MATLAB based software that allows for quantitative analysis of fluorescent time-lapse movies of living cells. The software package is developed most specifically for bacteria and has been instrumental in analyzing E.coli and B. subtilis movies.
- Windows / Linux / Mac OsX
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Young, J. W. ,Locke, J.C.W.,Altinok,A.,Rosenfeld,N.,Bacarian,T.,Swain,P.S.,Mjolsness,E.,Alon,U.,Elowitz,M.B.
Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy.
Nature Protocols 7, 80–88 (2012)