SCCT (Selection detection by Conditional Coalescent Tree) is a efficiency computational software developed to detect recent positive selection using deep sequencing data. It’s robust to various demographic events and also robust to the variations of mutation rates and recombination rates.
- Linux / Windows
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Detecting recent positive selection with high accuracy and reliability by conditional coalescent tree.
Wang M, Huang X, Li R, Xu H, Jin L, He Y.
Mol Biol Evol. 2014 Nov;31(11):3068-80. doi: 10.1093/molbev/msu244.