SARA is a program for pair-wise alignment of RNA structures as a web server for structure-based RNA function assignment. The SARA server relies on the SARA program, which aligns two RNA structures based on a unit-vector root-mean-square approach. The likely accuracy of the SARA alignments is assessed by three different P-values estimating the statistical significance of the sequence, secondary structure and tertiary structure identity scores, respectively.
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Capriotti E, Marti-Renom MA. (2009).
SARA: a server for function annotation of RNA structures.
Nucleic Acids Research. 37 (Web Server issue): W260-W265.