SAP (Statistical Assignmnet Package) uses a Bayesian approach to calculate a probability distribution over all taxa represented in a sequence database. The probability of assignment to each taxa serves as a measure of confidence in the assignment.
Kasper Munch @ the Bioinformatics Research Centre (BiRC) at Aarhus University, Denmark.
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Kasper Munch et al.
Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
Syst Biol (2008) 57 (5): 750-757.