SALT 20140716 – Protein Domain Classifier

SALT 20140716

:: DESCRIPTION

SALT (Sensitive and Accurate protein domain cLassification Tool) can accurately and sensitivity classify short reads of NGS into protein domain families. It is based on profile HMM and a supervised graph contribution algorithm. Compared to existing tools, it has high sensitivity and specificity in classifying short reads into their native domain families.

::DEVELOPER

SALT team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • g++ compiler

:: DOWNLOAD

 SALT

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Sep 1;29(17):2103-11. doi: 10.1093/bioinformatics/btt357. Epub 2013 Jun 19.
A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads.
Zhang Y1, Sun Y, Cole JR.