SALAMI (STRUCTURE ALIGNMENT AND MATCH INQUIRY) takes a protein structure (PDB format) or asks for the name of a PDB file. This is then compared against structures from the PDB. After about 20 minutes, you will receive a set of structural alignments, completely independent of sequence identity. The service is similar to that provided by dali.
Center for Bioinformatics (ZBH), University of Hamburg
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Nucleic Acids Res. 2009 Jul;37(Web Server issue):W480-4. doi: 10.1093/nar/gkp431. Epub 2009 May 22.
The SALAMI protein structure search server.
Margraf T1, Schenk G, Torda AE.