SABmark (Sequence Alignment Benchmark) is designed to assess the performance of both multiple and pairwise (protein) sequence alignment algorithms, and is extremely easy to use.
The Bioinformatics unit, Vrije Universiteit Brussel
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SABmark–a benchmark for sequence alignment that covers the entire known fold space.
Van Walle I, Lasters I, Wyns L.
Bioinformatics. 2005 Apr 1;21(7):1267-8