RseqFlow – RNA-seq Data Analysis Workflow

RseqFlow

:: DESCRIPTION

RseqFlow is a workflow which can implement a set of RNA-Seq analysis, such as performing quality control (QC) for sequencing data, generating signal tracks of mapped reads, calculating expression levels, and identifying differentially expressed genes. The workflow allows users to express multi-step RNA-Seq analysis by just providing sequencing RNA-Seq datasets and typing a few commands in an easy-to-use environment.

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::DEVELOPER

Ting Chen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows / MacOsX
  • Virtual Machine

:: DOWNLOAD

 RseqFlow

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Sep 15;27(18):2598-600. Epub 2011 Jul 27.
RseqFlow: workflows for RNA-Seq data analysis.
Wang Y, Mehta G, Mayani R, Lu J, Souaiaia T, Chen Y, Clark A, Yoon HJ, Wan L, Evgrafov OV, Knowles JA, Deelman E, Chen T.

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