rQuant 2.1 – Transcriptome Quantitation from RNA-seq Experiments

rQuant 2.1

:: DESCRIPTION

rQuant is a software of quantitative detection of alternative transcripts with RNA-Seq data.High-throughput sequencing technologies open exciting new approaches to transcriptome profiling. For the important task of inferring transcript abundances from RNA-Seq data, the author developed a new technique, called rQuant, based on quadratic programming. Our method estimates biases introduced by experimental settings and is thus a powerful tool to reveal and quantify novel (alternative) transcripts.

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::DEVELOPER

Rätsch Lab @ the Friedrich Miescher Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX

:: DOWNLOAD

  rQuant

:: MORE INFORMATION

Citation:

Bohnert, R, Behr, J, and Rätsch, G (2009):
Transcript quantification with RNA-Seq data,
BMC Bioinformatics, 10(S13):P5.

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