Mar 132014
 

RNApasta 1.01

:: DESCRIPTION

RNApasta is a utility for collecting statistics from aligned and structurally annotated RNA sequences.RNApasta is a java utility intended to work with RNA structural alignments, including the motifs of stem-loops and pseudoknots.  RNApasta can perform a variety of statistical analyses, and has editing capabilities intended to be useful with alignments that contain variable data such as the presence or absence of stem-loops or pseudoknots across sequences.  RNApasta can read Rfam-stockholm formatted files or pasta formatted files.

::DEVELOPER

Russell Malmberg Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

RNApasta

:: MORE INFORMATION

Citation

Malmberg, R., Shaw, T., and Cai, L. (2010)
RNApasta: a tool for analysis of RNA structural alignments,
Int J Bioinform Res Appl. 2010;6(6):571-83.

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