The rnamotif program searches a database for RNA sequences that match a “motif” describing secondary structure interactions. A match means that the given sequence is capable of adopting the given secondary structure, but is not intended to be predictive. Matches can be ranked by applying scoring rules that may provide finer distinctions than just matching to a profile.
- Window with Cygwin / Linux / Mac OsX
:: MORE INFORMATION
T. Macke, D. Ecker, R. Gutell, D. Gautheret, D.A. Case and R. Sampath.
RNAMotif — A new RNA secondary structure definition and discovery algorithm.
Nucl. Acids Res. 29, 4724-4735 (2001).