Apr 032014
 

RNAMoIP 1.1

:: DESCRIPTION

RNA-MoIP is an integer programming framework that refines predicted secondary structures (i.e. removes incorrect canonical base-pairs) to accommodate the insertion of RNA 3D motifs (i.e. hairpins, internal loops and k-way junctions). The predictions can be used as templates to generate complete 3D structures with the MC-Sym program.

::DEVELOPER

Computational structural biology research group at McGill

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python

:: DOWNLOAD

 RNAMoIP

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Jun 15;28(12):i207-14. doi: 10.1093/bioinformatics/bts226.
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
Reinharz V1, Major F, Waldispühl J.

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