Nov 102012
 

rnalocopt 20101116

:: DESCRIPTION

rnalocopt is a web server that computes the partition function and samples structures from the ensemble of locally optimal secondary structures of a given RNA sequence. Here, a locally optimal secondary structure is one for which the free energy can not be lowered by the addition or removal of a single base pair (i.e. a kinetic trap in unit resolution energetics).

::DEVELOPER

Clote Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Mac OsX / Windows
  • WebServer
  • C Compiler

:: DOWNLOAD

 rnalocopt

:: MORE INFORMATION

Citation:

W.A. Lorenz, P. Clote.
Computing the partition function for kinetically trapped RNA secondary structures.
Public Library of Science One (PLoS ONE), (2011) PLoS ONE 6(1): e16178.

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