RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA.The hybridisation is performed in a kind of domain mode, ie. the short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.
- Linux / Mac OsX/ Windows
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Marc Rehmsmeier , Peter Steffen, Matthias Höchsmann, Robert Giegerich
Fast and effective prediction of microRNA/target duplexes
RNA, 10:1507-1517, 2004.