Dec 032011
 

RIND 6.9.4

:: DESCRIPTION

Rind computes a maximum-likelihood estimate of the number of times each residue was replaced into each position. Rind averages over several of the most likely phylogenies it is able to find using a user-specified distance-based method such as neighbor joining. The program can also make local changes to the topology when these will improve the likelihood. The evolutionary model used throughout the computation allows for different residue frequencies in each position, but ignores the genetic code.

::DEVELOPER

William J. Bruno

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Complier

:: DOWNLOAD

 RIND

:: MORE INFORMATION

Citation

W.J. Bruno,
Modeling Residue Usage in Aligned Protein Sequences via Maximum Likelihood“,
Mol. Biol. Evol. 13:1368 (1996)

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