rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio’s Single Molecule Read-time (SMRT) sequencing reads.
- Linux / Windows / MacOsX
- C++ Compiler
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rHAT: fast alignment of noisy long reads with regional hashing.
Liu B, Guan D, Teng M, Wang Y.
Bioinformatics. 2015 Nov 14. pii: btv662.