Jul 092013
 

RetroMap 0.021

:: DESCRIPTION

RetroMap is an application designed to help characterize LTR retroelements on a genome scale in a visually interactive manner. This is NOT a particularly great for comprehensive identification of elements found in highly nested contexts. Only the most internal element of those which are nested is likely to be identified as a complete element. The other elements will be treated as solo LTRs and internal regions depending on how you have set up your element searches. However, it is still a handy way to get a quick visual overview of the situation and create pretty figures.

::DEVELOPER

Brooke D. Peterson-Burch. 

:: SCREENSHOTS

RetroMap

:: REQUIREMENTS

  • Linux /Windows/ MacOsX
  • Java

:: DOWNLOAD

 RetroMap

:: MORE INFORMATION

Citation

Genome Biol. 2004;5(10):R78. Epub 2004 Sep 29.
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae.
Peterson-Burch BD, Nettleton D, Voytas DF.

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