Repseek is a tool to retrieve approximate repeats from large DNA sequences.Repseek is computationally efficient enough to handle large sequences and is flexible enough to account for influencing factors, such as sequence-composition biases both at the seed detection and alignment levels.
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Achaz, Boyer, Rocha, Viari and Coissac.
Repseek, a tool to retrieve approximate repeats from large DNA sequences.
Bioinformatics. 2007 Jan 1;23(1):119-21.