Jun 062014
 

REPET 2.2 / PASTEClassifier 1.0

:: DESCRIPTION

REPET is a software of detection, annotation and analysis of repeats in genomic sequences, specifically designed for transposable elements

PASTEClassifier  classifies TEs by searching for structural features and similarities.

::DEVELOPER

URGI

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 REPET , PASTEC

:: MORE INFORMATION

Citation

PASTEC: An Automatic Transposable Element Classification Tool.
Hoede C, Arnoux S, Moisset M, Chaumier T, Inizan O, Jamilloux V, Quesneville H.
PLoS One. 2014 May 2;9(5):e91929. doi: 10.1371/journal.pone.0091929.

Flutre T, Duprat E, Feuillet C, Quesneville H.
Considering transposable element diversification in de novo annotation approaches.
PLoS One. 2011 Jan 31;6(1):e16526.

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