RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
RepeatModeler team – Institute for Systems Biology
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PLoS One, 13 (3), e0193588 2018 Mar 14 eCollection 2018
Superior Ab Initio Identification, Annotation and Characterisation of TEs and Segmental Duplications From Genome Assemblies
Lu Zeng , R Daniel Kortschak , Joy M Raison , Terry Bertozzi , David L Adelson