RefineTree is a gene tree correction software, based on resolving a multifurcated gene tree in a way minimizing the reconciliation distance with a given species tree.
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Genome evolution-aware gene trees
E. Noutahi, M. Semeria, M. Lafond, J. Seguin, B. Boussau, L. Gueguen, N. El-Mabrouk and Eric Taniier,
submitted to PloS.Comp.Biol, 2015.