Feb 182016
 

RECON 1.05

:: DESCRIPTION

The RECON package performs de novo identification and classification of repeat sequence families from genomic sequences. The underlying algorithm is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. Specifically, our extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. RECON should be useful for first-pass automatic classification of repeats in newly sequenced genomes.

::DEVELOPER

Eddy lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Mac OsX/Windows
  • Perl 
  • C Compiler

:: DOWNLOAD

 RECON

:: MORE INFORMATION

Citation:

Bao Z. and Eddy S.R. (2002)
Automated de novo Identification of Repeat Sequence Families in Sequenced Genomes.
Genome Research, 12:1269-1276.

597 views

Sorry, the comment form is closed at this time.