Oct 232013
 

REAPR 1.0

:: DESCRIPTION

The REAPR pipeline performs computational screens for structural non-coding RNA while revealing even strongly structurally misaligned RNAs.

::DEVELOPER

Michael Yu, michaelyu@alum.mit.edu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • python
  • LocARNA
  • RNAz
  • ViennaRNA
  • squid
  • compalignp

:: DOWNLOAD

  REAPR

:: MORE INFORMATION

Citation:

Sebastian Will, Michael Yu, and Bonnie Berger.
Structure-based Whole Genome Realignment Reveals Many Novel Non-coding RNAs.”
Genome Res. 2013 Jun;23(6):1018-27. doi: 10.1101/gr.137091.111.

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