Re-searcher is a user-friendly configurable system for recurrent searches and reporting of new homologs in specified protein sequence databases. Searches can be performed at desired intervals either within NCBI or local databases using BLAST or PSI-BLAST. In addition to searches against an individual database, the system can perform “PDB-BLAST”-like combined searches, when PSI-BLAST profile generated during search against the first database is used to search the second database. The system supports multiple users each keeping track of multiple queries and query-specific results.
Laboratory of Bioinformatics, VU Institute of Biotechnology
- Web Server
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Repšys V., Margelevičius M. and Venclovas Č. (2008)
Re-searcher: a system for recurrent detection of homologous protein sequences.
BMC Bioinformatics 2008, 9:296