RASP 1.0.1 / WebRASP
RASP (Ribonucleic Acids Statistical Potential) is a knowledge-based potential for scoring RNA structures based on distance-dependent pairwise atomic interactions.
WebRASP is a server that computes energy scores for assessing the stability of RNA structures. The server receives as input a PDB file containing the atomic coordinates of the RNA structure and calculates the energy profile and total energy score of the molecule. The server displays the results graphically and the visualization can be modified by the user interactively.
- Linux/ Windows/ MacOsX
- C++ Compiler
:: MORE INFORMATION
Capriotti E, Norambuena T, Marti-Renom MA, Melo F. (2011)
All-atom knowledge-based potential for RNA structure prediction and assessment.
Bioinformatics. 2013 Oct 15;29(20):2649-50. doi: 10.1093/bioinformatics/btt441. Epub 2013 Aug 7.
WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures.
Norambuena T1, Cares JF, Capriotti E, Melo F.