Apr 142014
 

RASP 1.0.1 / WebRASP

:: DESCRIPTION

RASP (Ribonucleic Acids Statistical Potential) is a knowledge-based potential for scoring RNA structures based on distance-dependent pairwise atomic interactions.

WebRASP is a server that computes energy scores for assessing the stability of RNA structures. The server receives as input a PDB file containing the atomic coordinates of the RNA structure and calculates the energy profile and total energy score of the molecule. The server displays the results graphically and the visualization can be modified by the user interactively.

::DEVELOPER

Francisco Melo Ledermann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • C++ Compiler

:: DOWNLOAD

 RASP

:: MORE INFORMATION

Citation

Capriotti E, Norambuena T, Marti-Renom MA, Melo F. (2011)
All-atom knowledge-based potential for RNA structure prediction and assessment.
Bioinformatics 27(8):1086-93

Bioinformatics. 2013 Oct 15;29(20):2649-50. doi: 10.1093/bioinformatics/btt441. Epub 2013 Aug 7.
WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures.
Norambuena T1, Cares JF, Capriotti E, Melo F.

27 views

Sorry, the comment form is closed at this time.