RAPTOR is a protein threading program taking the pairwise contact potentital into account explicitly. The threading problem is formulated into a large scale Integer Program and solved by branch-and-cut method. Support Vector Machines are used to do fold recognition.
- Windows / Linux
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Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu.
RAPTOR: Optimal Protein Threading by Linear programming.
Journal of Bioinformatics and Computational Biology, 2003.