RAMPART is a de novo assembly pipeline that makes use of third party-tools and High Performance Computing resources. It can be used as a single interface to several popular assemblers, and can perform automated comparison and analysis of any generated assemblies.
The Genome Analysis Centre (TGAC)
- Windows /Linux/ MacOsX
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RAMPART: a workflow management system for de novo genome assembly.
Mapleson D, Drou N, Swarbreck D.
Bioinformatics. 2015 Jan 30. pii: btv056.