R2R (From Reads to Results) is a simple to use package for very sensitive analysis of short read sequence data obtained by NextGen sequencing techniques. R2R was developed in conjunction with data obtained on the Illumina GA platforms.
Ole Skovgaard (email@example.com )
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Genome Res. 2011 Aug;21(8):1388-93. doi: 10.1101/gr.117416.110.
Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing.
Skovgaard O, Bak M, L?bner-Olesen A, Tommerup N.