Jan 182016
 

r2cat

:: DESCRIPTION

r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the contigs onto the reference using a q-gram filter. The mapping is visualized in a synteny plot.

::DEVELOPER

Peter Husemann, Bielefeld University

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Mac / Windows
  • Java

:: DOWNLOAD

r2cat

:: MORE INFORMATION

Citation

Husemann, P. & Stoye, J.
r2cat: synteny plots and comparative assembly
Bioinformatics, 2010, Vol. 26(4), pp. 570-571

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