Jun 052014
 

Quikr 1.0.4

:: DESCRIPTION

Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data).

::DEVELOPER

Mathematical Biosciences Institute, The Ohio State University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX
  • Python
  • BioPython

:: DOWNLOAD

 Quikr 

:: MORE INFORMATION

Citation

Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.
Koslicki D, Foucart S, Rosen G.
Bioinformatics. 2013 Sep 1;29(17):2096-102. doi: 10.1093/bioinformatics/btt336.

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