Dec 162012
 

QSRA 1.0

:: DESCRIPTION

QSRA (Quality-value-guided Short Read Assembler) is a quality-value guided de novo short read assembler. QSRA generally produced the highest genomic coverage, while being faster than VCAKE. QSRA is extremely competitive in its longest contig and N50/N80 contig lengths, producing results of similar quality to those of EDENA and VELVET. QSRA provides a step closer to the goal of de novo assembly of complex genomes, improving upon the original VCAKE algorithm by not only drastically reducing runtimes but also increasing the viability of the assembly algorithm through further error handling capabilities.

::DEVELOPER

Mockler Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 QSRA

:: MORE INFORMATION

Citation

Bryant DW, Wong WK, Mockler TC.
QSRA – a quality-value guided de novo short read assembler.
BMC Bioinformatics 2009, 10:69

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