Dec 202015
 

QPALMA 0.9.3

:: DESCRIPTION

QPALMA is a software for computing accurate spliced alignments which takes advantage of the read’s quality information as well as computational splice site predictions. Our method uses a training set of spliced reads with quality information and known alignments. It uses a large margin approach similar to support vector machines to estimate its parameters to maximize alignment accuracy.

::DEVELOPER

Rätsch Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows / MacOsX
  • Python

:: DOWNLOAD

 QPALMA

:: MORE INFORMATION

Citation

Bioinformatics. 2008 Aug 15;24(16):i174-80.
Optimal spliced alignments of short sequence reads.
De Bona F, Ossowski S, Schneeberger K, Rätsch G.

232 views

Sorry, the comment form is closed at this time.