QGene is a free, open-source Java program that runs on any computer operating system. It is intended for doing comparative analyses of QTL mapping data sets in computationally efficient ways that are of maximum use to analysts. It is also written with a plug-in architecture for ready extensibility.
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Joehanes R, Nelson JC. 2008.
QGene 4.0, an extensible Java QTL-analysis platform.
Bioinformatics 24: 2788-2789.