QCS (Quality Control Score) is a new method to evaluate the quality of structure predictions, especially for template free structure prediction. It was developed to mimic visual inspction by human expert and it captures both global and local structural features, with emphasis on global topology.
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Cong Q, Kinch LN, Pei J, Shi S, Grishin VN, Li W, Grishin NV.
An automatic method for CASP9 free modeling structure prediction assessment.
Bioinformatics. 2011 Dec 15;27(24):3371-8. Epub 2011 Oct 12.