A simple and intuitive interface, PyMod, between the popular molecular graphics system PyMOL and several other tools (i.e., BLAST, ClustalW, Muscle, CEalign and MODELLER) has been developed, to show how the integration of the individual steps required for homology modelling and sequence/structure analysis within the PyMOL framework can hugely simplify these tasks.PyMod represents a new tool for the analysis and the manipulation of protein sequences and structures.
- Linux/ WIndows/MacOsX
- Numpy, BLAST+ 2.2.25+, MUSCLE, ClustalW and MODELLER
:: MORE INFORMATION
BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S2. doi: 10.1186/1471-2105-13-S4-S2.
PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL.
Bramucci E, Paiardini A, Bossa F, Pascarella S.