PuFFIN (Positioning for Fuzzy and FIxed Nucleosomes) is a command line tool for accurate placing of the nucleosomes based on the pair-end reads. It was designed to place non-overlapping nucleosomes using extra lenght information present in pair-end data-sets.
- Linux/ MacOsX
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PuFFIN–a parameter-free method to build nucleosome maps from paired-end reads.
Polishko A, Bunnik EM, Le Roch KG, Lonardi S.
BMC Bioinformatics. 2014;15 Suppl 9:S11. doi: 10.1186/1471-2105-15-S9-S11.